Tools

curl https://api.ilepbase.com/api/v1/tools

{
  "success": true,
  "data": {
    "items": [
      {
        "id": "jbrowse",
        "name": "JBrowse 2.0",
        "status": "stable",
        "language": "TypeScript",
        "repository": "https://github.com/GMOD/jbrowse-components",
        "description": "Genome browser for interactive visualization of genome assemblies, annotations, and variation tracks.",
        "tags": [ "genome-browser", "visualization", "web" ],
        "links": [
          { "label": "GitHub", "href": "https://github.com/GMOD/jbrowse-components" },
          { "label": "Documentation", "href": "https://jbrowse.org/jb2/docs/" }
        ]
      },
      {
        "id": "blast",
        "name": "BLAST",
        "status": "stable",
        "language": "C++",
        "repository": "https://github.com/ncbi/ncbi-blast",
        "description": "NCBI BLAST+ for sequence similarity search against Lepidoptera-specific databases.",
        "tags": [ "blast", "alignment", "sequence-search" ],
        "links": [
          { "label": "NCBI", "href": "https://blast.ncbi.nlm.nih.gov/" }
        ]
      },
      {
        "id": "molstar",
        "name": "Mol* Viewer",
        "status": "stable",
        "language": "TypeScript",
        "repository": "https://github.com/molstar/molstar",
        "description": "3D molecular structure viewer for protein structure visualization and analysis. Supports PDB, CIF, and AlphaFold models.",
        "tags": [ "3d-viewer", "protein-structure", "webgl" ],
        "links": [
          { "label": "Mol*", "href": "https://molstar.org/" }
        ]
      },
      {
        "id": "mmnet",
        "name": "MMNet",
        "status": "active",
        "language": "Python",
        "repository": null,
        "description": "Multimodal species identification from specimen image and DNA barcode using deep learning.",
        "tags": [ "species-identification", "multimodal", "deep-learning" ],
        "links": []
      },
      {
        "id": "barcode-analysis",
        "name": "Barcode Analysis",
        "status": "active",
        "language": "R",
        "repository": null,
        "description": "DNA barcoding and ecological niche modeling workflow for species-level analysis.",
        "tags": [ "barcode", "niche-model", "ecological-modeling", "R" ],
        "links": []
      },
      {
        "id": "fuzzyid2",
        "name": "FuzzyID2",
        "status": "active",
        "language": "R",
        "repository": null,
        "description": "Fuzzy logic-based species identification using morphological and molecular trait data.",
        "tags": [ "identification", "fuzzy-logic", "species" ],
        "links": []
      },
      {
        "id": "barcodingr",
        "name": "BarcodingR",
        "status": "active",
        "language": "R",
        "repository": null,
        "description": "R package for DNA barcode sequence analysis, distance computation, and species delimitation.",
        "tags": [ "barcode", "R", "analysis", "species-delimitation" ],
        "links": []
      }
    ],
    "resources": [
      { "label": "iLepBase GitHub", "href": "https://github.com/ciallo/ilepbase" },
      { "label": "LepBase", "href": "https://lepbase.org/" },
      { "label": "Lepidoptera BOLD", "href": "https://www.boldsystems.org/" }
    ]
  },
  "timestamp": "2026-04-23T12:00:00.000Z"
}